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Surtt
07-12-2007, 11:52 AM
hxxp://blog.wired.com/wiredscience/2007/07/designer-virus-.html


By hacking a virus with artificial DNA, researchers at MIT and Boston University created a bacteria-killing machine that demonstrates the potential of synthetic biology.

The original virus -- called a bacteriophage, as it targets bacteria -- was modified with plug-and-play DNA sequences that made it produce enzymes that kill e. coli and break down the protein layers secreted by bacterial colonies. These layers, known as biofilms, insulate bacteria from regular bacteriophages (and antibiotics). The films make it difficult to keep medical equipment and water supply systems sterile.

To test the engineered T7 phage, the team cultivated E. coli biofilms on plastic pegs. They found that their engineered phage eliminated 99.997% of the bacterial biofilm cells, an improvement by two orders of magnitude over the phage's nonengineered cousin.

I talked to the lead investigator, James Collins, for an upcoming article on synthetic biology regulation. We discussed this latest work, and his description of the mechanism was pretty cool:

It's hard to get into biofilms. So we engineered the bacteriophages, once they got inside, to express an enzyme that would degrade the biofilm. Once inside the cell, they actually use cell's own machinery to do that. In addition, they make copies of themselves ... and then, when the cell bursts, it infects other bacteria.

And the biggest news about the new phage isn't what it could do to e. coli, but how the technique could be broadly applied:

The team's modular strategy can be thought of as a "plug and play" library, says Collins. "The library could contain different phages that target different species or strains of bacteria, each constructed using related design principles to express different enzymes."


This kind of thing scares the hell out of me, virus reproduce and mutate.
(Maybe I have just seen Jurassic Park one too many times.)

Brillig
07-12-2007, 12:12 PM
Nothing to worry about, bacteriophages (which have been around for eons, these guys didn't build one from scratch) are so far removed from anything that could harm you that it's not something to be concerned about.

Fonzie
07-12-2007, 12:42 PM
plug-and-play DNA sequences

Whoa.

Brillig
07-12-2007, 12:46 PM
Whoa.

Not really. Unless you're impressed by twenty-year-old technology :).

This is just scientists trying to talk cool, heh.

Surtt
07-12-2007, 12:48 PM
Nothing to worry about, bacteriophages (which have been around for eons, these guys didn't build one from scratch) are so far removed from anything that could harm you that it's not something to be concerned about.


I am mostly concerned about bio-engineering super efficient organisms for a specific purpose that jump species and attack unintended things.

Fonzie
07-12-2007, 12:48 PM
Not really. Unless you're impressed by twenty-year-old technology :).

This is just scientists trying to talk cool, heh.

I'm just imagining pulling DNA parts out of a box and plugging 'em right into an organism without any sort of installation disk.

That's crazy, right there.

flounder
07-12-2007, 12:53 PM
I am mostly concerned about bio-engineering super efficient organisms for a specific purpose that jump species and attack unintended things.

Nothing is stopping existing viruses from doing that now. I don't see why you should be any more worried about engineered viruses.

Brillig
07-12-2007, 12:53 PM
I am mostly concerned about bio-engineering super efficient organisms for a specific purpose that jump species and attack unintended things.

Not terribly likely. Bacteriophages are DNA viruses, which are many orders of magnitude more stable than RNA viruses.

Brillig
07-12-2007, 12:55 PM
Nothing is stopping existing viruses from doing that now. I don't see why you should be any more worried about engineered viruses.

Almost all the viruses people worry about, from the common cold to flu to SARS to Ebola, are RNA viruses. And we worry about them precisely because they can mutate and present unique challenges to the immune system. DNA viruses are so stable that they present very little threat.

Surtt
07-12-2007, 01:07 PM
Nothing is stopping existing viruses from doing that now. I don't see why you should be any more worried about engineered viruses.

Current viruses have evolved a long time to not hurt their host. A health host is a better breading ground. It seams all the nastiest ones have mutated and jumped species. The engineered one are going to be a efficient (dangerous) as we can make them so I am more worried about them then the ones in the wild.

Almost all the viruses people worry about, from the common cold to flu to SARS to Ebola, are RNA viruses. And we worry about them precisely because they can mutate and present unique challenges to the immune system. DNA viruses are so stable that they present very little threat.

All I can say is Murphy was an optimist and I hope you are right about the DNA viruses. ;)

heybrad
07-12-2007, 01:41 PM
I am mostly concerned about bio-engineering super efficient organisms for a specific purpose that jump species and attack unintended things.
"All I'm saying is that, uh... life, uh... finds a way!"
http://www.solarnavigator.net/films_movies_actors/actors_films_images/jurassic_park_tyranosaurus_rex_jeff_goldblum.jpg

Ksyrup
07-12-2007, 01:55 PM
I'm just imagining pulling DNA parts out of a box and plugging 'em right into an organism without any sort of installation disk.

That's crazy, right there.

The current versions mutate too slowly to worry about it. Now, when they come out with the 2.0 version, then you can start worrying. :)

Surtt
07-12-2007, 03:07 PM
The current versions mutate too slowly to worry about it. Now, when they come out with the 2.0 version, then you can start worrying. :)

Considering how long Spore has been in development, we probably don't

MrBigglesworth
07-12-2007, 06:21 PM
"From Scratch" is incorrect, I believe. All they did was insert DNA into an organism to enhance a purpose it already had. And that's been around for a while. Nice application of it though.