I was thinking of having the top 24 teams as independents/SEC and then use the remaining conferences in a certain order to establish the next best teams. So for example:
1. Independents (#1-12)
2. SEC (#13-24)
3. Big10 (#25-36)
4. Pac12 (#37-48)
5. BigXII (#49-60)
6. Big East (#61-72)
7. ACC (#73-84)
8. Mountain West (#85-96)
9. Sun Belt (#97-102)
10. WAC (#103-108)
11. Conference USA (#109-114)
12. MAC (#116-120)
So the top 8 conferences will have 12 teams in them a piece. The independents and SEC will feature the top 24 teams each year (The following years every conference will shift based on how they finished the previous year-you can decide that based on the bowls and there tie-ins). The independents and SEC will be the only 2 leagues jockeying for the bcs championship. Both conferences will have a conference championship, then each year the BCSchampionship game will tie-in the independent#1 vs. SEC#1!!
The bottom 2 teams from each league (minus the MAC) will then shift 1 conference lower. The top 2 teams of each league will then shift upwards (minus the independents since it is the highest). You can only shift once conference each year. Meaning, if you have an undefeated year as a MAC member you cannot jump CUSA and be in the WAC.
I think this would be cool to then start as a MAC team and work your way ALLLLL the way up to finally become an awesome team. Although, you could also have it a way that if a lower conference team plays a top team in a higher conference and wins that bowl game, then they can jump up. I have only begun to think this out.
Please help me think of some things I have forgot. I realize there will still be out of conference games, so you can designate some sort of importance to them (like a big OOC win may prevent religation the following year, idk).

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