i am having the same experience. Without fail, it a hit and run is called the pitch is out of the strike zone. Why not wait until a 2-0 or 3-1 count to hit and run?
Also, i got chewed out for stealing a base, even though it was on a 3-2 and I was safe. Then I stole another base and the manager benched me. That pissed me off so I stole another base and the manager told me if was my final warning. Wanting to see what would happen if I steal again, I run the very next game I am in the lineup. The manager just told me it was my final warning again. I am in AA. I wonder if they will send me to single-A or trade or cut me if I keep disobeying. It was too late last night for me to find out.