Yeah they should, but you probably can't edit them in dynasty, which totally ruins the feature they added on the first day patch.
After a quick glance at named roster file, I noticed Nick Foles is a scrambler changed from a balanced qb under the default rosters. What really sucks about this huge bug is EA finally had a legitimate scrambling logic system, albeit enjoyed by me for a few days, until I downloaded a named roster set. Although, qbs still scramble more than they did in NCAA 11, Denard Robinson and other scramblers have been pacified and their playmaking ability has been greatly diminished.