South Alabama was mistakenly left out of NCAA13. According to what I've read, the school is supposed to be getting "star" treatment for '14, including their stadium and custom stadium noises being included in the next title.
I think that for the next generation console, the NCAA series should include all FBS and FCS schools, especially in light of the probable death of the Big East. I loathe the idea of the super-conferences, and including all college football schools would be ridiculously awesome.