I believe that is the case, although I'm not sure. I would assume the injury limit effect the CPU injuries as well. See the post just about this one about the new franchise file, you might find that one more appealing as the injuries are not intentionally set to go long. With injury limits I took those teams at the limit (I think only Boston and the Yankees) and injured the 5 players with the highest overall rating. The other players will be placed on the 40 man roster (unless they're on 60-Day DL)