'System QBs' are referred to as such because the system they are in allows for good stats. The Steelers system is, like you said, a run first system that doesn't allow for those numbers. Steelers QBs are throwing the football mainly on 3rd downs or when the team is losing (with the occasional 1st and 2nd down long bal). Those aren't easy situations to throw, and Roethlisberger's high QB ratings in his first 2 years show how successful he was.
Ben's only in his 5th year as a starter and threw more picks than TDs in his 3rd year when he was rushed back from a life threatening motorcycle accident and appendectomy, and had a severe concussion midseason. Peyton had more picks than TDs in his rookie season and threw 23 picks his 4th year in the league. Brady has never been an interception thrower, but that's in part because he's a dink-dunker who's only averaged over 11.4 yards/completion 3 times in his career, and when he's averaged more it's due to his receivers having a lot of YAC. As for them being so godly to avoid sack... you're kidding yourself. They have great offensive lines and when faced with pressure they are no better than average. See Tom Brady in Super Bowl 42 and Peyton Manning against the Steelers at home 3 years ago.
I also agree with everything that's been said about Daunte and how Brady and Moss cheaped their way to that record. Anybody remember the 2nd Dolphins game that year when the Pats were shut out in the second half because Brady kept trying to force it to Moss when they were up 28-0 and he threw 2 picks? Manning in 2004 did NOT play that way. And he had a far superior season (in my opinion). Brady threw 81 more passes than Manning and only had 1 more TD and a much lower ypa despite having a higher completion %. Manning also sat out a few 4th quarters when the team was ahead and he only threw 2 passes in the season ender that year while Brady was throwing deep up 40-0.
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