I had the same problem—I notice a lot of people do. Once I got below a certain weight threshold and my body adapted to running regularly this, along with knee pain, stiffness, and anything else went away. I have bad gait, and pretty flat feet at this point in my life. I was always a sprinting guy. I ran 100 and 200m in HS and played RB.
Anecdotally it seems a lot of the running difficulties people have (and I had) are related to weight and fighting through the long adaptation phase.


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